Table 4 Neji concept recognition results on a variety of corpora and concept types
From: Configurable web-services for biomedical document annotation
| Corpus | Concept type | F-score (%) | Method |
|---|---|---|---|
| CRAFT [19] | Species [9] | 95 | D |
| Cell [9] | 92 | D | |
| Gene and protein [9] | 76 | ML | |
| Chemicals [9] | 65 | D | |
| Cellular component [9] | 83 | D | |
| Biological process and molecular function [9] | 63 | D | |
| NCBI Disease [20] | Disorders [9] | 85 | D |
| Anem [21] | Anatomy [9] | 82 | D |
| BC II gene mention [22] | Gene and protein [13] | 87 | ML |
| tmVar [16] | Genetic variants [18] | 86 | ML |
| BC IV ChemdNER [15] | Chemicals [17] | 87 | ML |
| BC V.5 CEMP [23, 24] | Chemicals [25] | 87 | ML |